Planteome: Term Details for "cytoplasmic pattern recognition receptor signaling pathway in response to virus" (GO:0039528)

You are using the Cyverse mirror of the Planteome Ontology Browser. The main site is at browser.planteome.org.

Notice

Some functionality on this page depends on JavaScript. To fully use the features of AmiGO 2, enable JavaScript in your browser and reload from the landing page.

Term Information

Accession: GO:0039528
Name: cytoplasmic pattern recognition receptor signaling pathway in response to virus
Ontology: biological_process
Synonyms: cytoplasmic pattern recognition receptor signalling pathway in response to virus, virus-induced cytoplasmic pattern recognition receptor signaling pathway, RIG-I-like receptor (RLR) signaling pathway, RIG-I/MDA5 signaling pathway, RIG-like helicase signaling pathway, RIG-like receptor signaling pathway, RLH signaling pathway, RLR signaling pathway, cytoplasmic caspase-recruiting domain (CARD) helicase signaling pathway
Alternate IDs: None
Definition: Any series of molecular signals generated as a consequence of a virus or viral RNA binding to a pattern recognition receptor (PRR) located in the cytoplasm. Cytosolic PRRs such as RIG-I (DDX58) and MDA-5 (IFIH1) detect RNA synthesized during active viral replication and trigger a signaling pathway to protect the host against viral infection, for example by inducing the expression of antiviral cytokines. Source: PMID:18272355, GOC:bf, PMID:19531363, PMID:17328678
Comment: This term should be used for annotation when it is not known which cytoplasmic pattern recognition receptor (PRR) has detected the viral RNA. If the PRR is known, consider instead the child terms. The RIG-like family is composed of at least RIG-I (retinoic acid inducible gene I; also known as DDX58), melanoma differentiation-associated gene 5 (MDA5; also known as helicard or IFIH1) and LGP2.
History: See term history for GO:0039528 at QuickGO
Subset: None
Related: Link to all annotated objects annotated to cytoplasmic pattern recognition receptor signaling pathway in response to virus.; Link to all direct and indirect annotations to cytoplasmic pattern recognition receptor signaling pathway in response to virus.; Link to all direct and indirect annotations download (limited to first 10,000) for cytoplasmic pattern recognition receptor signaling pathway in response to virus.
Feedback: Contact the Planteome feedback if you find mistakes or have concerns about the data you find here.
Comments, changes to terms, or requests for new ontology terms can be made at GO issue tracker on GitHub.

Filter results

External term view.

Viewing options

BFO:0000001 entity
GO:0008150 biological_process
GO:0008152 metabolic process
BFO:0000003 occurrent
GO:0050789 regulation of biological process
GO:0050896 response to stimulus
GO:0065007 biological regulation
GO:0009987 cellular process
GO:0043170 macromolecule metabolic process
GO:0071704 organic substance metabolic process
GO:0048518 positive regulation of biological process
BFO:0000015 process
GO:0019222 regulation of metabolic process
GO:0009607 response to biotic stimulus
GO:0009605 response to external stimulus
GO:0007154 cell communication
GO:0110165 cellular anatomical entity
GO:0051716 cellular response to stimulus
GO:0005575 cellular_component
GO:0010467 gene expression
GO:0044419 interspecies interaction between organisms
GO:0032501 multicellular organismal process
GO:0009893 positive regulation of metabolic process
GO:0050794 regulation of cellular process
GO:0060255 regulation of macromolecule metabolic process
GO:0043207 response to external biotic stimulus
GO:0006950 response to stress
GO:0023052 signaling
GO:0001816 cytokine production
GO:0006952 defense response
GO:0002376 immune system process
GO:0005622 intracellular anatomical structure
GO:0010604 positive regulation of macromolecule metabolic process
GO:0010468 regulation of gene expression
GO:0051239 regulation of multicellular organismal process
GO:0051707 response to other organism
GO:0007165 signal transduction
GO:0005737 cytoplasm
GO:0098542 defense response to other organism
GO:0002252 immune effector process
GO:0030522 intracellular receptor signaling pathway
GO:0035556 intracellular signal transduction
GO:0002221 pattern recognition receptor signaling pathway
GO:0010628 positive regulation of gene expression
GO:0051240 positive regulation of multicellular organismal process
GO:0001817 regulation of cytokine production
GO:0009615 response to virus
GO:0098586 cellular response to virus
GO:0002753 cytoplasmic pattern recognition receptor signaling pathway
GO:0051607 defense response to virus
GO:0001819 positive regulation of cytokine production
GO:0039528 cytoplasmic pattern recognition receptor signaling pathway in response to virus
GO:0039530 MDA-5 signaling pathway
GO:0039532 negative regulation of viral-induced cytoplasmic pattern recognition receptor signaling pathway
GO:0039531 regulation of viral-induced cytoplasmic pattern recognition receptor signaling pathway
GO:0039529 RIG-I signaling pathway

Parents of cytoplasmic pattern recognition receptor signaling pathway in response to virus (GO:0039528)

subject	relation	object
cytoplasmic pattern recognition receptor signaling pathway in response to virus	is_a	cytoplasmic pattern recognition receptor signaling pathway (GO:0002753)
cytoplasmic pattern recognition receptor signaling pathway in response to virus	BFO:0000050	defense response to virus (GO:0051607)
cytoplasmic pattern recognition receptor signaling pathway in response to virus	is_a	cellular response to virus (GO:0098586)
cytoplasmic pattern recognition receptor signaling pathway in response to virus	is_a	positive regulation of cytokine production (GO:0001819)

Children of cytoplasmic pattern recognition receptor signaling pathway in response to virus (GO:0039528)

subject	relation	object
RIG-I signaling pathway (GO:0039529)	is_a	cytoplasmic pattern recognition receptor signaling pathway in response to virus
MDA-5 signaling pathway (GO:0039530)	is_a	cytoplasmic pattern recognition receptor signaling pathway in response to virus
regulation of viral-induced cytoplasmic pattern recognition receptor signaling pathway (GO:0039531)	RO:0002211	cytoplasmic pattern recognition receptor signaling pathway in response to virus
negative regulation of viral-induced cytoplasmic pattern recognition receptor signaling pathway (GO:0039532)	RO:0002212	cytoplasmic pattern recognition receptor signaling pathway in response to virus